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   Todd K. Leen, Professor    

    Department of Biomedical Engineering
    Phone: (503) 748-1160   FAX: (503) 748-1306
   




GEN 569 Scholarship Skills --- Winter 2010



Research Interests -

My research in machine learning focused along several threads including theory and algorithm synthesis, with applications to health care, signal processing, fault detection, and modeling in complex systems.  I also have collaborative projects in computational neuroscience.

Health Care Applications of Machine Learning

I collaborate with Misha Pavel, Tamara Hayes, and Deniz Erdogmus in the OHSU Point of Care Laboratory (POCL) and with Jeff Kaye director of OHSU's Layton Againg & Alzheimer's Disease Center.  My work with these colleagues is aimed at detecting behavioral changes that are predictive of emerging health problems, particularly cognitive decline.  This work makes use of a number of novel unobstrusive in-home monitoring technologies (see POCL) to provide early detection of health-related changes.  There are early results of our machine learning applications to this work in ICML08, ICASSP08, and  NIPS09.

Environmental Observation and Forecasting Systems

I've enjoyed a long collaboration with Antonio Baptista and OGI's Center for Coastal and Land-Margin Research. Our work with CCALMR's CORIE project is aimed at improving reliability of measurements and modeling for the Columbia River estuary. Our system for detecting sensor degradation cut salinity data loss by over 50%.  We have applied learning technology as key elements in a (problem-portable) data assimilation (model / data fusion) system.  Ours is the first data assimilation system to operate successfully in a strongly non-linear river-estuarine-ocean system.  The system makes novel use of neural networks trained to emulate the dynamics of an extremely large (10^7 degrees of freedom) finite element model of the system.  These emulators, or model surrogates, provide a reduction in the time required for model evaluation by a factor of one to twelve thousand, enabling a dramatic increase in ensemble prediction capability.

Computational Neuroscience 

Drs. Pat Roberts, Nathan Sawtell and myself have an NSF project on sensory-motor processing and memory in the mormyrid weakly electric fish.  These fish have an electro-location system that uses the animal's electric organ discharge (EOD) to navigate, explore objects, and find prey.  The electrosensory lateral line lobe (ELL) of the mormyrid fish integrates motor command, proprioceptive, and electrosensory information in a cerebellar-like structure.  This structure performs early electrosensory processing.  As part of its function, the ELL generates memories comprising the expected sensory signal from the fish's own electric discharge.  These memories are adaptive through spike-timing-dependent plasticity.  The project integrates modeling and neurophysiology experiments to determine how realistic patterns of excitation are processed in ELL, and how plasticity is controlled by recurrent connections from higher centers.   As part of the project, we are developing a novel computer-controlled stimulus system that provides precise control of the spatio-temporal profile of the electric images on the fish's skin.



   Neural Information Processing Systems (NIPS) Conferences  I served as Program Chair in 1999 and General Chair in 2000.


 Selected Publications

  CV pdf.

Other Fun Stuff

Surrogate Movies Plume Estuary